Citations

Primary citation:

L. Martínez, R. Andreani, J. M. Martínez
Convergent algorithms for protein structural alignment.
BMC Bioinformatics, 2007, 8:306. [Full Text Online]
List of pdb files used in the examples of this paper: [pdb list] [the files, 2.6Mb]

Related work:

R. Andreani, J. M. Martínez, L. Martínez, F. Yano
Continuous Optimization Methods for Structure Alignment.
Mathematical Programming, 112:93-124, 2008. [PDF]

R. Andreani, J. M. Martínez, L. Martínez
Trust region superposition methods for protein alignment.
IMA Journal on Numerical Analysis, 28, 690-710, 2008. [PDF]
List of pdb files used in the examples of this paper: [pdb list] [the files, 2.6Mb]

R. Andreani, J. M. Martínez, L. Martínez, F. Yano
Low Order Value Optimization and Applications.
Journal of Global Optimization, 43, 1-22, 2009. [PDF]